PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3268_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 1019aa    MW: 114427 Da    PI: 8.2303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3268_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09157205355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  RrC3268_p2 157 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 205
                 58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.43E-10152209No hitNo description
SuperFamilySSF474592.22E-16152221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-16155222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6157205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF139675.6E-38264423IPR032880Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domain
PfamPF147034.2E-19444601IPR02781510TM putative phosphate transporter, cytosolic domain
PfamPF027141.5E-69612878IPR003864Calcium-dependent channel, 7TM region, putative phosphate
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1019 aa     Download sequence    Send to blast
MGGESNEGEM GFKHGDDESG ISRVGVTSMP LYAKADHFFS SADWDPVVSG GGGGFSSSHY  60
TSMGLDNPGM SCFPHYQPGS GYPDMPASLL PFGDCGGGGH IKKAVEEFQE DPQRGSDHQS  120
QKKQKNDQSK EKESSQSEEA PKENYIHMRA RRGQATNSHS LAERVRREKI SERMRLLQEL  180
VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP ELNIDIDRIL AKDTTLESEL  240
QSLYQMGFVS NPSNMSSFSP NNALLTSAGI NIGICVVLVS LYSILRKQPS NYCVYFGRML  300
SGGRVKRNDP RWYERFAPSP SWLVKAWETT EDELLAAAGL DAVVFVRMVI CSIRIFSVVA  360
VVCISFVLPV NYYGQKMEHK EAHLESLSIF TIENLNQRSR WLWVHCISLY IITSAACALL  420
YFEYKTIAKK RLAYMAASSS KPSHFTVLMR AVPQSPDQSY SETVSQYFTN YYAPSYLSHL  480
MVYRDGIIQR LLNDAEKMRQ AIKHVSPDVS CNPSMKSCTF CTGPGPTNSF KIISDEAGGV  540
KKLELGELTT LTTTEEERPV AFVFFKTRYD ALVASEVLHT SNPMLWVADL APEPHDVYWK  600
NLKVPYRQLW MRKIATLVGA VAFMFVFLLP VTGIQGLTQL NTLSKNFPFL RPILKKDLMN  660
RVITGYLPSV ILVLFFYTVP PLMMYFSTLE GCISRSLRKR SACIRVVYFT IWNVFFVNIL  720
SGSVIRQLSI FSSVKDLPAQ LAKAVPTQAG FFMTYCFTSG WAGLACEIIQ PVGLIWNLIS  780
RVIVKNKDAS YETLRFPYHI EIPRLLLFGL LGFTNSVIAP LILPFLLIYF FLAYLIYKNQ  840
IINVYITKYE SGGQYWPIFH NTTIFSLILS QVIALGFFGL KLSTVASGFT IPLILLTLLF  900
SEYCRQRFAP IFQKYPAEIL IAMDRADEIT GKMEELHNNL KTAYSQIPIC SQESSKAGCS  960
PPCSDQELPA SEVLKAENLE AEVIKAFQRS NSHDLEVKSC PSGSPSRYSP GFPEIYKRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604834.10.0PREDICTED: CSC1-like protein At1g10090
RefseqXP_013604835.10.0PREDICTED: CSC1-like protein At1g10090
SwissprotQ94A870.0CSCL9_ARATH; CSC1-like protein At1g10090
TrEMBLA0A0D3DNU10.0A0A0D3DNU1_BRAOL; Uncharacterized protein
STRINGBra018462.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-112bHLH family protein